Vinnustofa Lífvísindaseturs í lífupplýsingafræði
Læknagarður
stofa Lg-229
BMC Bioinformatics Facility hands-on sessions | Session 003
Transcriptome quantification with kallisto
When: Wednesday, December 11, 2024 from 09:00 to 10:30
Where: Læknagarður Lg-229 and Zoom https://eu01web.zoom.us/my/adrian.hi (we plan to record the session)
Schedule: https://tinyurl.com/bmcbfhosschedule
Our next session will be a hands-on introduction to quantifying a human transcriptome using kallisto and RNA-sequencing data. We will start by running kallisto on a single sample, and then we will demonstrate how to run a reproducible Nextflow pipeline with multiple samples on Elja.
Please make sure you have Jupyter Lab and access to elja. It is recommended but not necessary to have kallisto installed locally (in your laptop) as we will run kallisto in Google Colab and elja. We are both (Adrian and Snævar) available to help you install these tools on your computers before Wednesday's session. Don't hesitate to contact us for help on this matter.
See you all on Wednesday!
Adrián & Snævar
BMC Bioinformatics Facility